An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) (Q21194867): Difference between revisions

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scientific article

Language	Label	Description	Also known as
English	An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)	scientific article

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scholarly article

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) (English)

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Escherichia coli

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Bernhard Palsson

4

object named as

Bernhard O Palsson

author given names

Bernhard O

author last names

Palsson

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Jennifer L. Reed

1

object named as

Jennifer L Reed

author given names

Jennifer L

author last names

Reed

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Dimensions Publication ID

18 August 2022

author name string

Thuy D Vo

2

author given names

Thuy D

author last names

Vo

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Dimensions Publication ID

18 August 2022

Christophe H Schilling

3

author given names

Christophe H

author last names

Schilling

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Dimensions Publication ID

18 August 2022

language of work or name

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publication date

2003

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4

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9

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R54

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https://scigraph.springernature.com/pub.10.1186/gb-2003-4-9-r54

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The EcoCyc Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

A functional update of the Escherichia coli K-12 genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

Analysis of optimality in natural and perturbed metabolic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

Combining evidence using p-values: application to sequence homology searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

19 March 2017

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

7 April 2017

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

7 April 2017

Thirteen years of building constraint-based in silico models of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

Genome-scale microbial in silico models: the constraints-based approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

The enigmatic Escherichia coli fadE gene is yafH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

Metabolic modelling of microbes: the flux-balance approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

The EBI SRS server--recent developments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

LIGAND: database of chemical compounds and reactions in biological pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

Metabolic modeling of microbial strains in silico.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

12 September 2017

Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

27 September 2017

Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

29 November 2018

In silico biology through "omics".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

29 November 2018

Characterizing the metabolic phenotype: a phenotype phase plane analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

29 November 2018

Robustness analysis of the Escherichia coli metabolic network

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

29 November 2018

The challenges of in silico biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=193654

29 November 2018

Identifiers

10.1186/GB-2003-4-9-R54

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Dimensions Publication ID

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OpenCitations bibliographic resource ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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